integration.hpp

Go to the documentation of this file.

 
#ifndef DEM_INTEGRATION_HPP
#define DEM_INTEGRATION_HPP
 
#include <Kokkos_Core.hpp>
 
#include "contact_preprocessing.hpp"  // ContactC, CpExec/CpMem
#include "dem_portable.hpp"
 
namespace peclet::dem {
 
struct Domain {
  F3 min, max, size;
  bool periodic_x, periodic_y, periodic_z;
};
 
using V3 = Kokkos::View<float* [3], CpMem>;
using V4 = Kokkos::View<float* [4], CpMem>;
using Vf = Kokkos::View<float*, CpMem>;
using Vi = Kokkos::View<int*, CpMem>;
 
namespace detail {
KOKKOS_INLINE_FUNCTION void st3(const V3& v, int i, F3 a) {
  v(i, 0) = a.x;
  v(i, 1) = a.y;
  v(i, 2) = a.z;
}
KOKKOS_INLINE_FUNCTION void st4(const V4& v, int i, F4 a) {
  v(i, 0) = a.x;
  v(i, 1) = a.y;
  v(i, 2) = a.z;
  v(i, 3) = a.w;
}
}  // namespace detail
 
inline void predictVelocityKokkos(int n, V3 pos, Vf invMass, V3 vel, V4 quat, V3 angVel,
                                  V3 invInertia, V3 posPred, V4 quatPred, V3 velPred, V3 angVelPred,
                                  V3 deltaPos, V4 deltaQuat, V3 deltaVel, V3 deltaAngVel,
                                  Vi constraintCounts, F3 gravity, float dt, V3 extForce) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::predict_velocity", Kokkos::RangePolicy<CpExec>(space, 0, n),
      KOKKOS_LAMBDA(int i) {
        const float invM = invMass(i);
        F3 v = ldF3(vel, i);
        if (invM > 0.0f) {
          v = add3(v, scale3(gravity, dt));
          // external force (fluid drag, etc.): F=ma => dv = F*invMass*dt (extForce is a FORCE, so it
          // scales with 1/mass; gravity above is already an acceleration).
          v = add3(v, scale3(ldF3(extForce, i), invM * dt));
        }
        detail::st3(velPred, i, v);
 
        F3 wpred = ldF3(angVel, i);
        if (invM > 0.0f) {
          const F3 invI = ldF3(invInertia, i);
          if (invI.x > 0.0f || invI.y > 0.0f || invI.z > 0.0f) {
            const F4 q = ldF4(quat, i);
            F3 wb = invRotateVector(q, ldF3(angVel, i));
            const F3 Ib{(invI.x > 1e-9f) ? 1.0f / invI.x : 0.0f,
                        (invI.y > 1e-9f) ? 1.0f / invI.y : 0.0f,
                        (invI.z > 1e-9f) ? 1.0f / invI.z : 0.0f};
            const F3 Lb{Ib.x * wb.x, Ib.y * wb.y, Ib.z * wb.z};
            const F3 wxL = cross3v(wb, Lb);
            const F3 alpha{-invI.x * wxL.x, -invI.y * wxL.y, -invI.z * wxL.z};
            wb = add3(wb, scale3(alpha, dt));
            wpred = rotateVector(q, wb);
          }
        }
        detail::st3(angVelPred, i, wpred);
 
        F3 x = ldF3(pos, i);
        if (invM > 0.0f)
          x = add3(x, scale3(v, dt));
        detail::st3(posPred, i, x);
        detail::st4(quatPred, i, ldF4(quat, i));
 
        detail::st3(deltaVel, i, F3{0, 0, 0});
        detail::st3(deltaAngVel, i, F3{0, 0, 0});
        detail::st3(deltaPos, i, F3{0, 0, 0});
        detail::st4(deltaQuat, i, F4{0, 0, 0, 0});
        constraintCounts(i) = 0;
      });
  space.fence();
}
 
inline void applyVelocityDeltasKokkos(int n, V3 velPred, V3 angVelPred, V3 deltaVel,
                                      V3 deltaAngVel) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::apply_velocity_deltas", Kokkos::RangePolicy<CpExec>(space, 0, n),
      KOKKOS_LAMBDA(int i) {
        detail::st3(velPred, i, add3(ldF3(velPred, i), ldF3(deltaVel, i)));
        detail::st3(angVelPred, i, add3(ldF3(angVelPred, i), ldF3(deltaAngVel, i)));
        detail::st3(deltaVel, i, F3{0, 0, 0});
        detail::st3(deltaAngVel, i, F3{0, 0, 0});
      });
  space.fence();
}
 
inline void applyVelocityAndPredictPositionKokkos(int n, V3 pos, Vf invMass, V3 vel, V4 quat,
                                                  V3 velPred, V3 angVelPred, V3 posPred,
                                                  V4 quatPred, V3 angVel, float dt) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::apply_vel_predict_pos", Kokkos::RangePolicy<CpExec>(space, 0, n),
      KOKKOS_LAMBDA(int i) {
        const F3 vStart = ldF3(vel, i);
        const F3 vFinal = ldF3(velPred, i);  // already includes deltas
        detail::st3(velPred, i, vFinal);
        detail::st3(vel, i, vFinal);  // persist v_{n+1}
 
        const float invM = invMass(i);
        F3 x = ldF3(pos, i);
        if (invM > 0.0f)
          x = add3(x, scale3(add3(vStart, vFinal), 0.5f * dt));
        detail::st3(posPred, i, x);
 
        const F4 q = ldF4(quat, i);
        const F3 omega = ldF3(angVelPred, i);
        detail::st3(angVel, i, omega);
        F4 qp = q;
        if (invM > 0.0f) {
          qp.x += 0.5f * dt * (omega.x * q.w + omega.y * q.z - omega.z * q.y);
          qp.y += 0.5f * dt * (omega.y * q.w + omega.z * q.x - omega.x * q.z);
          qp.z += 0.5f * dt * (omega.z * q.w + omega.x * q.y - omega.y * q.x);
          qp.w += 0.5f * dt * (-omega.x * q.x - omega.y * q.y - omega.z * q.z);
          const float len = Kokkos::sqrt(qp.x * qp.x + qp.y * qp.y + qp.z * qp.z + qp.w * qp.w);
          if (len > 1e-9f) {
            const float s = 1.0f / len;
            qp = F4{qp.x * s, qp.y * s, qp.z * s, qp.w * s};
          }
        }
        detail::st4(quatPred, i, qp);
      });
  space.fence();
}
 
inline void computeContactCountsKokkos(Kokkos::View<const ContactC*, CpMem> contacts,
                                       int numContacts, Vi constraintCounts) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::contact_counts", Kokkos::RangePolicy<CpExec>(space, 0, numContacts),
      KOKKOS_LAMBDA(int i) {
        const ContactC c = contacts(i);
        if (c.dist > 0.0f)
          return;
        Kokkos::atomic_add(&constraintCounts(c.bodyA), 1);
        if (c.bodyB >= 0)
          Kokkos::atomic_add(&constraintCounts(c.bodyB), 1);
      });
  space.fence();
}
 
inline void applyUpdatesKokkos(int n, V3 posPred, V3 velPred, V3 deltaPos, V3 deltaVel,
                               Vi constraintCounts) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::apply_updates", Kokkos::RangePolicy<CpExec>(space, 0, n), KOKKOS_LAMBDA(int i) {
        const int count = constraintCounts(i);
        if (count <= 0)
          return;
        const float f = 1.0f / static_cast<float>(count);
        detail::st3(posPred, i, add3(ldF3(posPred, i), scale3(ldF3(deltaPos, i), f)));
        detail::st3(velPred, i, add3(ldF3(velPred, i), scale3(ldF3(deltaVel, i), f)));
        detail::st3(deltaPos, i, F3{0, 0, 0});
        detail::st3(deltaVel, i, F3{0, 0, 0});
        constraintCounts(i) = 0;
      });
  space.fence();
}
 
inline void finalCommitKokkos(int n, V3 pos, Vf invMass, V3 posPred, V4 quat, V4 quatPred,
                              Domain dom) {
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::final_commit", Kokkos::RangePolicy<CpExec>(space, 0, n), KOKKOS_LAMBDA(int i) {
        F3 p = ldF3(posPred, i);
        if (dom.periodic_x) {
          if (p.x < dom.min.x)
            p.x += dom.size.x;
          else if (p.x >= dom.max.x)
            p.x -= dom.size.x;
        }
        if (dom.periodic_y) {
          if (p.y < dom.min.y)
            p.y += dom.size.y;
          else if (p.y >= dom.max.y)
            p.y -= dom.size.y;
        }
        if (dom.periodic_z) {
          if (p.z < dom.min.z)
            p.z += dom.size.z;
          else if (p.z >= dom.max.z)
            p.z -= dom.size.z;
        }
        detail::st3(pos, i, p);
        detail::st4(quat, i, ldF4(quatPred, i));
      });
  space.fence();
}
 
struct KE2 {
  double t = 0.0, r = 0.0;
  KOKKOS_INLINE_FUNCTION KE2& operator+=(const KE2& o) {
    t += o.t;
    r += o.r;
    return *this;
  }
};
inline void applyThermostatKokkos(int numReal, V3 vel, Vf invMass, V3 angVel, V3 invInertia,
                                  V4 quat, double kB, double tau, double Ttarget, float dt) {
  CpExec space;
  KE2 sum;
  Kokkos::parallel_reduce(
      "peclet::dem::thermo_energy", Kokkos::RangePolicy<CpExec>(space, 0, numReal),
      KOKKOS_LAMBDA(int i, KE2& acc) {
        const float invM = invMass(i);
        const F3 v = ldF3(vel, i);
        if (invM > 0.0f)
          acc.t += 0.5 * (1.0 / invM) * (v.x * v.x + v.y * v.y + v.z * v.z);
        const F3 invI = ldF3(invInertia, i);
        if (invI.x > 0.0f || invI.y > 0.0f || invI.z > 0.0f) {
          const F3 wb = invRotateVector(ldF4(quat, i), ldF3(angVel, i));
          const double Ix = (invI.x > 0.0f) ? 1.0 / invI.x : 0.0;
          const double Iy = (invI.y > 0.0f) ? 1.0 / invI.y : 0.0;
          const double Iz = (invI.z > 0.0f) ? 1.0 / invI.z : 0.0;
          acc.r += 0.5 * (Ix * wb.x * wb.x + Iy * wb.y * wb.y + Iz * wb.z * wb.z);
        }
      },
      sum);
 
  const double ndof = 3.0 * numReal;
  auto lambda = [&](double ke) {
    if (ndof <= 0 || kB <= 0)
      return 1.0f;
    const double Tcur = (2.0 * ke) / (ndof * kB);
    if (Tcur < 1e-6)
      return 1.0f;
    double f = 1.0 + (dt / tau) * (Ttarget / Tcur - 1.0);
    if (f < 0.0)
      f = 0.0;
    return static_cast<float>(Kokkos::sqrt(f));
  };
  const float lt = lambda(sum.t), lr = lambda(sum.r);
 
  Kokkos::parallel_for(
      "peclet::dem::thermo_scale", Kokkos::RangePolicy<CpExec>(space, 0, numReal),
      KOKKOS_LAMBDA(int i) {
        detail::st3(vel, i, scale3(ldF3(vel, i), lt));
        detail::st3(angVel, i, scale3(ldF3(angVel, i), lr));
      });
  space.fence();
}
 
inline void updateGrowthScalesKokkos(int n, Vf scale, Vf targetScale, float factor) {
  if (!(factor > 0.0f))
    return;
  CpExec space;
  Kokkos::parallel_for(
      "peclet::dem::growth", Kokkos::RangePolicy<CpExec>(space, 0, n),
      KOKKOS_LAMBDA(int i) { scale(i) = targetScale(i) * factor; });
  space.fence();
}
 
}  // namespace peclet::dem
 
#endif  // DEM_INTEGRATION_HPP